Emil Alexov to Models, Molecular
This is a "connection" page, showing publications Emil Alexov has written about Models, Molecular.
Connection Strength
5.979
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DelPhiForce web server: electrostatic forces and energy calculations and visualization. Bioinformatics. 2017 Nov 15; 33(22):3661-3663.
Score: 0.512
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Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling. BMC Struct Biol. 2012 Dec 05; 12:31.
Score: 0.363
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DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol. Bioinformatics. 2012 Jun 15; 28(12):1655-7.
Score: 0.348
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Modeling effects of human single nucleotide polymorphisms on protein-protein interactions. Biophys J. 2009 Mar 18; 96(6):2178-88.
Score: 0.281
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Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. Int J Biol Macromol. 2008 Aug 15; 43(2):198-208.
Score: 0.265
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Protein-protein interactions. Curr Pharm Biotechnol. 2008 Apr; 9(2):55-6.
Score: 0.263
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Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions. Curr Pharm Biotechnol. 2008 Apr; 9(2):123-33.
Score: 0.263
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Assessing the quality of the homology-modeled 3D structures from electrostatic standpoint: test on bacterial nucleoside monophosphate kinase families. J Bioinform Comput Biol. 2007 Jun; 5(3):693-715.
Score: 0.248
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Electrostatic control of the overall shape of calmodulin: numerical calculations. Eur Biophys J. 2007 Mar; 36(3):225-37.
Score: 0.243
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Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies. Biophys J. 2007 Mar 15; 92(6):1891-9.
Score: 0.241
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Electrostatic properties of protein-protein complexes. Biophys J. 2006 Sep 01; 91(5):1724-36.
Score: 0.232
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Role of the protein side-chain fluctuations on the strength of pair-wise electrostatic interactions: comparing experimental with computed pK(a)s. Proteins. 2003 Jan 01; 50(1):94-103.
Score: 0.183
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BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics. Int J Mol Sci. 2020 Dec 29; 22(1).
Score: 0.159
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Novel Genetic Markers for Early Detection of Elevated Breast Cancer Risk in Women. Int J Mol Sci. 2019 Sep 28; 20(19).
Score: 0.146
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Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations. Sci Rep. 2017 08 15; 7(1):8237.
Score: 0.126
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A New DelPhi Feature for Modeling Electrostatic Potential around Proteins: Role of Bound Ions and Implications for Zeta-Potential. Langmuir. 2017 03 07; 33(9):2283-2295.
Score: 0.122
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Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules. Sci Rep. 2016 Mar 18; 6:23249.
Score: 0.114
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Revealing the Effects of Missense Mutations Causing Snyder-Robinson Syndrome on the Stability and Dimerization of Spermine Synthase. Int J Mol Sci. 2016 Jan 08; 17(1).
Score: 0.113
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Mutations in the KDM5C ARID Domain and Their Plausible Association with Syndromic Claes-Jensen-Type Disease. Int J Mol Sci. 2015 Nov 13; 16(11):27270-87.
Score: 0.111
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Impact of Rett Syndrome Mutations on MeCP2 MBD Stability. Biochemistry. 2015 Oct 20; 54(41):6357-68.
Score: 0.111
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Structural, Dynamical, and Energetical Consequences of Rett Syndrome Mutation R133C in MeCP2. Comput Math Methods Med. 2015; 2015:746157.
Score: 0.107
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Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins. Curr Opin Struct Biol. 2015 Jun; 32:18-24.
Score: 0.106
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Continuous development of schemes for parallel computing of the electrostatics in biological systems: implementation in DelPhi. J Comput Chem. 2013 Aug 15; 34(22):1949-60.
Score: 0.094
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Enhancing human spermine synthase activity by engineered mutations. PLoS Comput Biol. 2013; 9(2):e1002924.
Score: 0.092
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The role of protonation states in ligand-receptor recognition and binding. Curr Pharm Des. 2013; 19(23):4182-90.
Score: 0.091
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Analyzing effects of naturally occurring missense mutations. Comput Math Methods Med. 2012; 2012:805827.
Score: 0.087
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Progress in the prediction of pKa values in proteins. Proteins. 2011 Dec; 79(12):3260-75.
Score: 0.084
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Developing hybrid approaches to predict pKa values of ionizable groups. Proteins. 2011 Dec; 79(12):3389-99.
Score: 0.082
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In silico and in vitro investigations of the mutability of disease-causing missense mutation sites in spermine synthase. PLoS One. 2011; 6(5):e20373.
Score: 0.082
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Structural assessment of the effects of amino acid substitutions on protein stability and protein protein interaction. Int J Comput Biol Drug Des. 2010; 3(4):334-49.
Score: 0.080
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Computational analysis of missense mutations causing Snyder-Robinson syndrome. Hum Mutat. 2010 Sep; 31(9):1043-9.
Score: 0.078
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Electrostatic and lipid anchor contributions to the interaction of transducin with membranes: mechanistic implications for activation and translocation. J Biol Chem. 2008 Nov 07; 283(45):31197-207.
Score: 0.068
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Optimization of electrostatic interactions in protein-protein complexes. Biophys J. 2007 Nov 15; 93(10):3340-52.
Score: 0.063
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Predicting interacting and interfacial residues using continuous sequence segments. Int J Biol Macromol. 2007 Dec 01; 41(5):615-23.
Score: 0.063
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BANMOKI: a searchable database of homology-based 3D models and their electrostatic properties of five bacterial nucleoside monophosphate kinase families. Int J Biol Macromol. 2007 Jun 01; 41(1):114-9.
Score: 0.061
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PROTCOM: searchable database of protein complexes enhanced with domain-domain structures. Nucleic Acids Res. 2007 Jan; 35(Database issue):D575-9.
Score: 0.060
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Predicting 3D structures of transient protein-protein complexes by homology. Biochim Biophys Acta. 2006 Sep; 1764(9):1498-511.
Score: 0.059
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Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein-inhibitor association: application to plasmepsin, cathepsin D and endothiapepsin-pepstatin complexes. Proteins. 2004 Aug 15; 56(3):572-84.
Score: 0.051
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Calculated protein and proton motions coupled to electron transfer: electron transfer from QA- to QB in bacterial photosynthetic reaction centers. Biochemistry. 1999 Jun 29; 38(26):8253-70.
Score: 0.036
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Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity. Bioinformatics. 2014 Aug 15; 30(16):2302-9.
Score: 0.025
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Structural and functional consequences of single amino acid substitutions in the pyrimidine base binding pocket of Escherichia coli CMP kinase. FEBS J. 2007 Jul; 274(13):3363-73.
Score: 0.016
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Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides. J Mol Biol. 2007 Mar 09; 366(5):1475-96.
Score: 0.015
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Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain. J Mol Biol. 2006 Feb 03; 355(5):1078-94.
Score: 0.014
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Comparative study of generalized born models: Born radii and peptide folding. J Phys Chem B. 2005 Feb 24; 109(7):3008-22.
Score: 0.013
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Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling. Proteins. 2003; 53 Suppl 6:430-5.
Score: 0.011