Deepak Bastia to DNA Replication
This is a "connection" page, showing publications Deepak Bastia has written about DNA Replication.
Connection Strength
8.788
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Phosphorylation of CMG helicase and Tof1 is required for programmed fork arrest. Proc Natl Acad Sci U S A. 2016 06 28; 113(26):E3639-48.
Score: 0.482
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Mechanism and physiological significance of programmed replication termination. Semin Cell Dev Biol. 2014 Jun; 30:165-73.
Score: 0.416
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Regulation of replication termination by Reb1 protein-mediated action at a distance. Cell. 2010 Sep 17; 142(6):868-78.
Score: 0.324
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Replication fork arrest and rDNA silencing are two independent and separable functions of the replication terminator protein Fob1 of Saccharomyces cerevisiae. J Biol Chem. 2010 Apr 23; 285(17):12612-9.
Score: 0.311
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Investigations of pi initiator protein-mediated interaction between replication origins alpha and gamma of the plasmid R6K. J Biol Chem. 2010 Feb 19; 285(8):5695-704.
Score: 0.308
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Mechanisms of polar arrest of a replication fork. Mol Microbiol. 2009 Apr; 72(2):279-85.
Score: 0.291
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Contrasting roles of checkpoint proteins as recombination modulators at Fob1-Ter complexes with or without fork arrest. Eukaryot Cell. 2009 Apr; 8(4):487-95.
Score: 0.290
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Mechanistic insights into replication termination as revealed by investigations of the Reb1-Ter3 complex of Schizosaccharomyces pombe. Mol Cell Biol. 2008 Nov; 28(22):6844-57.
Score: 0.282
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Replication termination mechanism as revealed by Tus-mediated polar arrest of a sliding helicase. Proc Natl Acad Sci U S A. 2008 Sep 02; 105(35):12831-6.
Score: 0.280
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Molecular architecture of a eukaryotic DNA replication terminus-terminator protein complex. Mol Cell Biol. 2006 Nov; 26(21):8061-74.
Score: 0.244
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Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin melting. Mol Cell. 2005 Dec 22; 20(6):833-43.
Score: 0.233
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The DnaK-DnaJ-GrpE chaperone system activates inert wild type pi initiator protein of R6K into a form active in replication initiation. J Biol Chem. 2004 Dec 03; 279(49):50886-94.
Score: 0.215
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swi1- and swi3-dependent and independent replication fork arrest at the ribosomal DNA of Schizosaccharomyces pombe. Proc Natl Acad Sci U S A. 2004 Sep 28; 101(39):14085-90.
Score: 0.214
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Biochemical investigations of control of replication initiation of plasmid R6K. J Biol Chem. 2004 Feb 20; 279(8):6711-9.
Score: 0.202
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Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem. 2004 Jan 16; 279(3):1932-41.
Score: 0.201
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Reconstitution of R6K DNA replication in vitro using 22 purified proteins. J Biol Chem. 2003 Nov 14; 278(46):45476-84.
Score: 0.199
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A replication terminus located at or near a replication checkpoint of Bacillus subtilis functions independently of stringent control. J Biol Chem. 2001 Mar 23; 276(12):8771-7.
Score: 0.165
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Termination of DNA replication of bacterial and plasmid chromosomes. Mol Microbiol. 1999 Mar; 31(6):1611-8.
Score: 0.145
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Mechanism of recruitment of DnaB helicase to the replication origin of the plasmid pSC101. Proc Natl Acad Sci U S A. 1999 Jan 05; 96(1):73-8.
Score: 0.144
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Mechanistic studies of initiator-initiator interaction and replication initiation. EMBO J. 1998 Sep 01; 17(17):5192-200.
Score: 0.140
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Mechanistic studies on the impact of transcription on sequence-specific termination of DNA replication and vice versa. J Biol Chem. 1998 Jan 30; 273(5):3051-9.
Score: 0.135
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Termination of DNA replication in prokaryotic chromosomes. Genet Eng (N Y). 1997; 19:101-19.
Score: 0.125
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Helicase-contrahelicase interaction and the mechanism of termination of DNA replication. Cell. 1996 Nov 29; 87(5):881-91.
Score: 0.124
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Direct physical interaction between DnaG primase and DnaB helicase of Escherichia coli is necessary for optimal synthesis of primer RNA. Proc Natl Acad Sci U S A. 1996 Nov 12; 93(23):12902-7.
Score: 0.124
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The replication initiator protein pi of the plasmid R6K specifically interacts with the host-encoded helicase DnaB. Proc Natl Acad Sci U S A. 1996 May 28; 93(11):5522-6.
Score: 0.120
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The relationship between sequence-specific termination of DNA replication and transcription. EMBO J. 1996 May 15; 15(10):2530-9.
Score: 0.120
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The dimer-dimer interaction surface of the replication terminator protein of Bacillus subtilis and termination of DNA replication. Proc Natl Acad Sci U S A. 1996 Apr 16; 93(8):3253-8.
Score: 0.119
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Mechanism of regulation of 'chromosome kissing' induced by Fob1 and its physiological significance. Genes Dev. 2015 Jun 01; 29(11):1188-201.
Score: 0.112
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Crystallization and preliminary X-ray characterization of the eukaryotic replication terminator Reb1-Ter DNA complex. Acta Crystallogr F Struct Biol Commun. 2015 Apr; 71(Pt 4):414-8.
Score: 0.111
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Termination of DNA replication in vitro: requirement for stereospecific interaction between two dimers of the replication terminator protein of Bacillus subtilis and with the terminator site to elicit polar contrahelicase and fork impedance. EMBO J. 1995 Feb 01; 14(3):619-28.
Score: 0.110
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The replication terminator protein of the gram-positive bacterium Bacillus subtilis functions as a polar contrahelicase in gram-negative Escherichia coli. Proc Natl Acad Sci U S A. 1994 Nov 08; 91(23):11143-7.
Score: 0.108
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A 27 kd protein of E. coli promotes antitermination of replication in vitro at a sequence-specific replication terminus. Cell. 1993 Jan 15; 72(1):113-20.
Score: 0.095
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Structural and functional analysis of a replication enhancer: separation of the enhancer activity from origin function by mutational dissection of the replication origin gamma of plasmid R6K. Proc Natl Acad Sci U S A. 1992 Jun 01; 89(11):5078-82.
Score: 0.091
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Activation in vivo of the minimal replication origin beta of plasmid R6K requires a small target sequence essential for DNA looping. New Biol. 1992 May; 4(5):569-80.
Score: 0.091
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Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance. EMBO J. 1992 Mar; 11(3):1205-16.
Score: 0.090
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Conformational changes induced by integration host factor at origin gamma of R6K and copy number control. J Biol Chem. 1991 Aug 25; 266(24):15924-37.
Score: 0.086
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Replication of plasmid R6K origin gamma in vitro. Dependence on dual initiator proteins and inhibition by transcription. J Biol Chem. 1991 Aug 25; 266(24):16056-62.
Score: 0.086
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Cooperativity at a distance promoted by the combined action of two replication initiator proteins and a DNA bending protein at the replication origin of pSC101. Genes Dev. 1991 Aug; 5(8):1453-63.
Score: 0.086
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Replication terminator protein of Escherichia coli is a transcriptional repressor of its own synthesis. Proc Natl Acad Sci U S A. 1991 May 01; 88(9):3867-71.
Score: 0.084
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Escherichia coli replication terminator protein impedes simian virus 40 (SV40) DNA replication fork movement and SV40 large tumor antigen helicase activity in vitro at a prokaryotic terminus sequence. Proc Natl Acad Sci U S A. 1991 Apr 01; 88(7):2618-22.
Score: 0.084
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DNA-protein interaction at the replication termini of plasmid R6K. Genes Dev. 1991 Jan; 5(1):74-82.
Score: 0.083
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Sequence-specific and polarized replication termination in vitro: complementation of extracts of tus- Escherichia coli by purified Ter protein and analysis of termination intermediates. Proc Natl Acad Sci U S A. 1990 Apr; 87(7):2828-32.
Score: 0.078
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A host-encoded DNA-binding protein promotes termination of plasmid replication at a sequence-specific replication terminus. Proc Natl Acad Sci U S A. 1989 May; 86(9):3026-30.
Score: 0.074
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Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein. Cell. 1988 Feb 12; 52(3):375-83.
Score: 0.068
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A replication initiator protein enhances the rate of hybrid formation between a silencer RNA and an activator RNA. Cell. 1987 Nov 06; 51(3):455-62.
Score: 0.066
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DnaA protein is required for replication of the minimal replicon of the broad-host-range plasmid RK2 in Escherichia coli. J Bacteriol. 1987 Oct; 169(10):4703-9.
Score: 0.066
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The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101. Cell. 1987 Jun 05; 49(5):709-17.
Score: 0.064
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Crystal structure of pi initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication. Proc Natl Acad Sci U S A. 2006 Dec 05; 103(49):18481-6.
Score: 0.062
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The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2006 Jan 24; 103(4):897-902.
Score: 0.059
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Conformational changes in a replication origin induced by an initiator protein. Cell. 1985 Nov; 43(1):189-97.
Score: 0.058
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Sap1p binds to Ter1 at the ribosomal DNA of Schizosaccharomyces pombe and causes polar replication fork arrest. J Biol Chem. 2005 Nov 25; 280(47):39135-42.
Score: 0.057
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DNA-protein interaction at the replication origins of plasmid chromosomes. Basic Life Sci. 1985; 30:397-414.
Score: 0.054
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Reconstitution of F factor DNA replication in vitro with purified proteins. J Biol Chem. 2004 Apr 23; 279(17):17404-10.
Score: 0.051
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DNA-protein interaction at the origin of DNA replication of the plasmid pSC101. Cell. 1983 Dec; 35(2 Pt 1):495-502.
Score: 0.051
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Use of gene fusions and protein-protein interaction in the isolation of a biologically active regulatory protein: the replication initiator protein of plasmid R6K. Proc Natl Acad Sci U S A. 1983 Nov; 80(22):6848-52.
Score: 0.050
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Primary structure of the essential replicon of the plasmid pSC101. Proc Natl Acad Sci U S A. 1983 Nov; 80(21):6557-61.
Score: 0.050
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Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNA. Cell. 1983 Aug; 34(1):125-34.
Score: 0.049
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The replication initiator protein of plasmid R6K tagged with beta-galactosidase shows sequence-specific DNA-binding. Cell. 1983 Jan; 32(1):131-40.
Score: 0.047
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The nucleotide sequence of the replication origin beta of the plasmid R6K. J Biol Chem. 1982 Nov 25; 257(22):13823-7.
Score: 0.047
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Primary structure of the replication initiation protein of plasmid R6K. Proc Natl Acad Sci U S A. 1982 Sep; 79(18):5475-9.
Score: 0.046
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Molecular cloning of the replication terminus of the plasmid R6K. Gene. 1981 Jun-Jul; 14(1-2):81-9.
Score: 0.042
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A single domain of the replication termination protein of Bacillus subtilis is involved in arresting both DnaB helicase and RNA polymerase. J Biol Chem. 2001 Jun 29; 276(26):23471-9.
Score: 0.042
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The nucleotide sequence surrounding the replication terminus of R6K. Proc Natl Acad Sci U S A. 1981 Apr; 78(4):2095-9.
Score: 0.042
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Termination of DNA replication in vitro at a sequence-specific replication terminus. Cell. 1981 Mar; 23(3):681-7.
Score: 0.042
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Structural and functional analysis of a bipolar replication terminus. Implications for the origin of polarity of fork arrest. J Biol Chem. 2001 Apr 20; 276(16):13160-8.
Score: 0.041
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The nucleotide sequence surrounding the origin of DNA replication of Col E1. Nucleic Acids Res. 1977 Sep; 4(9):3123-42.
Score: 0.033
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Structure of the replication terminus-terminator protein complex as probed by affinity cleavage. Proc Natl Acad Sci U S A. 1996 Oct 01; 93(20):10647-52.
Score: 0.031
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The contrahelicase activities of the replication terminator proteins of Escherichia coli and Bacillus subtilis are helicase-specific and impede both helicase translocation and authentic DNA unwinding. J Biol Chem. 1995 Dec 08; 270(49):29138-44.
Score: 0.029
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Studies on the late replication of phage lambda: rolling-circle replication of the wild type and a partially suppressed strain, Oam29 Pam80. J Mol Biol. 1975 Oct 25; 98(2):305-20.
Score: 0.029
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Crystal structure of the replication terminator protein from B. subtilis at 2.6 A. Cell. 1995 Feb 24; 80(4):651-60.
Score: 0.028
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The replication terminator protein of E. coli is a DNA sequence-specific contra-helicase. Cell. 1989 Nov 17; 59(4):667-74.
Score: 0.019
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Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNA. Proc Natl Acad Sci U S A. 1988 Sep; 85(17):6287-91.
Score: 0.018
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The replication initiator protein of plasmid pSC101 is a transcriptional repressor of its own cistron. Proc Natl Acad Sci U S A. 1985 Apr; 82(8):2252-6.
Score: 0.014
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Determination of restriction sites and the nucleotide sequence surrounding the relaxation site of ColE1. J Mol Biol. 1978 Oct 05; 124(4):601-39.
Score: 0.009