Deepak Bastia to Plasmids
This is a "connection" page, showing publications Deepak Bastia has written about Plasmids.
Connection Strength
4.079
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Investigations of pi initiator protein-mediated interaction between replication origins alpha and gamma of the plasmid R6K. J Biol Chem. 2010 Feb 19; 285(8):5695-704.
Score: 0.310
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Replication initiation at a distance: determination of the cis- and trans-acting elements of replication origin alpha of plasmid R6K. J Biol Chem. 2010 Feb 19; 285(8):5705-12.
Score: 0.309
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Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin melting. Mol Cell. 2005 Dec 22; 20(6):833-43.
Score: 0.235
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The DnaK-DnaJ-GrpE chaperone system activates inert wild type pi initiator protein of R6K into a form active in replication initiation. J Biol Chem. 2004 Dec 03; 279(49):50886-94.
Score: 0.216
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Biochemical investigations of control of replication initiation of plasmid R6K. J Biol Chem. 2004 Feb 20; 279(8):6711-9.
Score: 0.204
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Reconstitution of R6K DNA replication in vitro using 22 purified proteins. J Biol Chem. 2003 Nov 14; 278(46):45476-84.
Score: 0.200
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Termination of DNA replication of bacterial and plasmid chromosomes. Mol Microbiol. 1999 Mar; 31(6):1611-8.
Score: 0.146
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Mechanism of recruitment of DnaB helicase to the replication origin of the plasmid pSC101. Proc Natl Acad Sci U S A. 1999 Jan 05; 96(1):73-8.
Score: 0.145
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Mechanistic studies of initiator-initiator interaction and replication initiation. EMBO J. 1998 Sep 01; 17(17):5192-200.
Score: 0.141
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Termination of DNA replication in prokaryotic chromosomes. Genet Eng (N Y). 1997; 19:101-19.
Score: 0.126
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Multiple pathways of copy control of gamma replicon of R6K: mechanisms both dependent on and independent of cooperativity of interaction of tau protein with DNA affect the copy number. Proc Natl Acad Sci U S A. 1994 Jul 05; 91(14):6438-42.
Score: 0.106
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Structural and functional analysis of a replication enhancer: separation of the enhancer activity from origin function by mutational dissection of the replication origin gamma of plasmid R6K. Proc Natl Acad Sci U S A. 1992 Jun 01; 89(11):5078-82.
Score: 0.092
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Activation in vivo of the minimal replication origin beta of plasmid R6K requires a small target sequence essential for DNA looping. New Biol. 1992 May; 4(5):569-80.
Score: 0.091
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Conformational changes induced by integration host factor at origin gamma of R6K and copy number control. J Biol Chem. 1991 Aug 25; 266(24):15924-37.
Score: 0.087
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Replication of plasmid R6K origin gamma in vitro. Dependence on dual initiator proteins and inhibition by transcription. J Biol Chem. 1991 Aug 25; 266(24):16056-62.
Score: 0.087
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Cooperativity at a distance promoted by the combined action of two replication initiator proteins and a DNA bending protein at the replication origin of pSC101. Genes Dev. 1991 Aug; 5(8):1453-63.
Score: 0.087
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DNA-protein interaction at the replication termini of plasmid R6K. Genes Dev. 1991 Jan; 5(1):74-82.
Score: 0.083
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A host-encoded DNA-binding protein promotes termination of plasmid replication at a sequence-specific replication terminus. Proc Natl Acad Sci U S A. 1989 May; 86(9):3026-30.
Score: 0.074
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Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNA. Proc Natl Acad Sci U S A. 1988 Sep; 85(17):6287-91.
Score: 0.071
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A replication initiator protein enhances the rate of hybrid formation between a silencer RNA and an activator RNA. Cell. 1987 Nov 06; 51(3):455-62.
Score: 0.067
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DnaA protein is required for replication of the minimal replicon of the broad-host-range plasmid RK2 in Escherichia coli. J Bacteriol. 1987 Oct; 169(10):4703-9.
Score: 0.066
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The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101. Cell. 1987 Jun 05; 49(5):709-17.
Score: 0.065
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A replication origin is turned off by an origin-"silencer" sequence. Cell. 1986 Dec 05; 47(5):785-92.
Score: 0.063
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Crystal structure of pi initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication. Proc Natl Acad Sci U S A. 2006 Dec 05; 103(49):18481-6.
Score: 0.063
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The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2006 Jan 24; 103(4):897-902.
Score: 0.059
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Replication initiator protein of plasmid R6K autoregulates its own synthesis at the transcriptional step. Proc Natl Acad Sci U S A. 1985 May; 82(9):2574-8.
Score: 0.056
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The replication initiator protein of plasmid pSC101 is a transcriptional repressor of its own cistron. Proc Natl Acad Sci U S A. 1985 Apr; 82(8):2252-6.
Score: 0.056
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DNA-protein interaction at the replication origins of plasmid chromosomes. Basic Life Sci. 1985; 30:397-414.
Score: 0.055
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Reconstitution of F factor DNA replication in vitro with purified proteins. J Biol Chem. 2004 Apr 23; 279(17):17404-10.
Score: 0.052
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DNA-protein interaction at the origin of DNA replication of the plasmid pSC101. Cell. 1983 Dec; 35(2 Pt 1):495-502.
Score: 0.051
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Use of gene fusions and protein-protein interaction in the isolation of a biologically active regulatory protein: the replication initiator protein of plasmid R6K. Proc Natl Acad Sci U S A. 1983 Nov; 80(22):6848-52.
Score: 0.051
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Primary structure of the essential replicon of the plasmid pSC101. Proc Natl Acad Sci U S A. 1983 Nov; 80(21):6557-61.
Score: 0.051
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Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNA. Cell. 1983 Aug; 34(1):125-34.
Score: 0.050
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The replication initiator protein of plasmid R6K tagged with beta-galactosidase shows sequence-specific DNA-binding. Cell. 1983 Jan; 32(1):131-40.
Score: 0.048
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The nucleotide sequence of the replication origin beta of the plasmid R6K. J Biol Chem. 1982 Nov 25; 257(22):13823-7.
Score: 0.047
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Primary structure of the replication initiation protein of plasmid R6K. Proc Natl Acad Sci U S A. 1982 Sep; 79(18):5475-9.
Score: 0.047
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Molecular cloning of the replication terminus of the plasmid R6K. Gene. 1981 Jun-Jul; 14(1-2):81-9.
Score: 0.043
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The nucleotide sequence surrounding the replication terminus of R6K. Proc Natl Acad Sci U S A. 1981 Apr; 78(4):2095-9.
Score: 0.042
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Termination of DNA replication in vitro at a sequence-specific replication terminus. Cell. 1981 Mar; 23(3):681-7.
Score: 0.042
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Nucleotide sequence determination of a strong promoter of the colicin E 1 plasmid. Analysis of restriction sites protected by RNA polymerase interactions before and after limited transcription. Nucleic Acids Res. 1979 Nov 10; 7(5):1247-62.
Score: 0.038
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Determination of restriction sites and the nucleotide sequence surrounding the relaxation site of ColE1. J Mol Biol. 1978 Oct 05; 124(4):601-39.
Score: 0.036
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The nucleotide sequence surrounding the origin of DNA replication of Col E1. Nucleic Acids Res. 1977 Sep; 4(9):3123-42.
Score: 0.033
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Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance. EMBO J. 1992 Mar; 11(3):1205-16.
Score: 0.023
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Sequence-specific and polarized replication termination in vitro: complementation of extracts of tus- Escherichia coli by purified Ter protein and analysis of termination intermediates. Proc Natl Acad Sci U S A. 1990 Apr; 87(7):2828-32.
Score: 0.020
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The replication terminator protein of E. coli is a DNA sequence-specific contra-helicase. Cell. 1989 Nov 17; 59(4):667-74.
Score: 0.019
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The E2 "gene" of bovine papillomavirus encodes an enhancer-binding protein. Proc Natl Acad Sci U S A. 1987 Mar; 84(5):1215-8.
Score: 0.016
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Rapid purification of a cloned gene product by genetic fusion and site-specific proteolysis. Proc Natl Acad Sci U S A. 1984 Aug; 81(15):4692-6.
Score: 0.013