Connection

Deepak Bastia to DNA-Binding Proteins

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This is a "connection" page, showing publications Deepak Bastia has written about DNA-Binding Proteins.
Deepak Bastia
Connection Strength
6.485
DNA-Binding Proteins
  1. Phosphorylation of CMG helicase and Tof1 is required for programmed fork arrest. Proc Natl Acad Sci U S A. 2016 06 28; 113(26):E3639-48.
    View in: PubMed
    Score: 0.393
  2. Mechanism of regulation of 'chromosome kissing' induced by Fob1 and its physiological significance. Genes Dev. 2015 Jun 01; 29(11):1188-201.
    View in: PubMed
    Score: 0.366
  3. The intra-S phase checkpoint protein Tof1 collaborates with the helicase Rrm3 and the F-box protein Dia2 to maintain genome stability in Saccharomyces cerevisiae. J Biol Chem. 2011 Jan 28; 286(4):2445-54.
    View in: PubMed
    Score: 0.267
  4. Regulation of replication termination by Reb1 protein-mediated action at a distance. Cell. 2010 Sep 17; 142(6):868-78.
    View in: PubMed
    Score: 0.264
  5. Replication fork arrest and rDNA silencing are two independent and separable functions of the replication terminator protein Fob1 of Saccharomyces cerevisiae. J Biol Chem. 2010 Apr 23; 285(17):12612-9.
    View in: PubMed
    Score: 0.254
  6. Contrasting roles of checkpoint proteins as recombination modulators at Fob1-Ter complexes with or without fork arrest. Eukaryot Cell. 2009 Apr; 8(4):487-95.
    View in: PubMed
    Score: 0.237
  7. Mechanistic insights into replication termination as revealed by investigations of the Reb1-Ter3 complex of Schizosaccharomyces pombe. Mol Cell Biol. 2008 Nov; 28(22):6844-57.
    View in: PubMed
    Score: 0.230
  8. Molecular architecture of a eukaryotic DNA replication terminus-terminator protein complex. Mol Cell Biol. 2006 Nov; 26(21):8061-74.
    View in: PubMed
    Score: 0.199
  9. Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin melting. Mol Cell. 2005 Dec 22; 20(6):833-43.
    View in: PubMed
    Score: 0.190
  10. Sap1p binds to Ter1 at the ribosomal DNA of Schizosaccharomyces pombe and causes polar replication fork arrest. J Biol Chem. 2005 Nov 25; 280(47):39135-42.
    View in: PubMed
    Score: 0.187
  11. The DnaK-DnaJ-GrpE chaperone system activates inert wild type pi initiator protein of R6K into a form active in replication initiation. J Biol Chem. 2004 Dec 03; 279(49):50886-94.
    View in: PubMed
    Score: 0.175
  12. Reconstitution of F factor DNA replication in vitro with purified proteins. J Biol Chem. 2004 Apr 23; 279(17):17404-10.
    View in: PubMed
    Score: 0.167
  13. Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem. 2004 Jan 16; 279(3):1932-41.
    View in: PubMed
    Score: 0.164
  14. A single domain of the replication termination protein of Bacillus subtilis is involved in arresting both DnaB helicase and RNA polymerase. J Biol Chem. 2001 Jun 29; 276(26):23471-9.
    View in: PubMed
    Score: 0.138
  15. Structural and functional analysis of a bipolar replication terminus. Implications for the origin of polarity of fork arrest. J Biol Chem. 2001 Apr 20; 276(16):13160-8.
    View in: PubMed
    Score: 0.135
  16. Mechanism of recruitment of DnaB helicase to the replication origin of the plasmid pSC101. Proc Natl Acad Sci U S A. 1999 Jan 05; 96(1):73-8.
    View in: PubMed
    Score: 0.117
  17. Helicase-contrahelicase interaction and the mechanism of termination of DNA replication. Cell. 1996 Nov 29; 87(5):881-91.
    View in: PubMed
    Score: 0.101
  18. Structure of the replication terminus-terminator protein complex as probed by affinity cleavage. Proc Natl Acad Sci U S A. 1996 Oct 01; 93(20):10647-52.
    View in: PubMed
    Score: 0.100
  19. The structure and function of the replication terminator protein of Bacillus subtilis: identification of the 'winged helix' DNA-binding domain. EMBO J. 1996 Jun 17; 15(12):3164-73.
    View in: PubMed
    Score: 0.098
  20. Structural aspects of protein-DNA interactions as revealed by conversion of the interacting protein into a sequence-specific cross-linking agent or a chemical nuclease. Structure. 1996 Jun 15; 4(6):661-4.
    View in: PubMed
    Score: 0.098
  21. The replication initiator protein pi of the plasmid R6K specifically interacts with the host-encoded helicase DnaB. Proc Natl Acad Sci U S A. 1996 May 28; 93(11):5522-6.
    View in: PubMed
    Score: 0.098
  22. The relationship between sequence-specific termination of DNA replication and transcription. EMBO J. 1996 May 15; 15(10):2530-9.
    View in: PubMed
    Score: 0.098
  23. Mechanism of Regulation of Intrachromatid Recombination and Long-Range Chromosome Interactions in Saccharomyces cerevisiae. Mol Cell Biol. 2016 05 15; 36(10):1451-63.
    View in: PubMed
    Score: 0.098
  24. The dimer-dimer interaction surface of the replication terminator protein of Bacillus subtilis and termination of DNA replication. Proc Natl Acad Sci U S A. 1996 Apr 16; 93(8):3253-8.
    View in: PubMed
    Score: 0.097
  25. Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe. Proc Natl Acad Sci U S A. 2016 Apr 19; 113(16):E2267-76.
    View in: PubMed
    Score: 0.097
  26. The contrahelicase activities of the replication terminator proteins of Escherichia coli and Bacillus subtilis are helicase-specific and impede both helicase translocation and authentic DNA unwinding. J Biol Chem. 1995 Dec 08; 270(49):29138-44.
    View in: PubMed
    Score: 0.095
  27. Crystallization and preliminary X-ray characterization of the eukaryotic replication terminator Reb1-Ter DNA complex. Acta Crystallogr F Struct Biol Commun. 2015 Apr; 71(Pt 4):414-8.
    View in: PubMed
    Score: 0.090
  28. Termination of DNA replication in vitro: requirement for stereospecific interaction between two dimers of the replication terminator protein of Bacillus subtilis and with the terminator site to elicit polar contrahelicase and fork impedance. EMBO J. 1995 Feb 01; 14(3):619-28.
    View in: PubMed
    Score: 0.089
  29. The replication terminator protein of the gram-positive bacterium Bacillus subtilis functions as a polar contrahelicase in gram-negative Escherichia coli. Proc Natl Acad Sci U S A. 1994 Nov 08; 91(23):11143-7.
    View in: PubMed
    Score: 0.088
  30. A 27 kd protein of E. coli promotes antitermination of replication in vitro at a sequence-specific replication terminus. Cell. 1993 Jan 15; 72(1):113-20.
    View in: PubMed
    Score: 0.078
  31. Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance. EMBO J. 1992 Mar; 11(3):1205-16.
    View in: PubMed
    Score: 0.073
  32. Conformational changes induced by integration host factor at origin gamma of R6K and copy number control. J Biol Chem. 1991 Aug 25; 266(24):15924-37.
    View in: PubMed
    Score: 0.070
  33. Replication of plasmid R6K origin gamma in vitro. Dependence on dual initiator proteins and inhibition by transcription. J Biol Chem. 1991 Aug 25; 266(24):16056-62.
    View in: PubMed
    Score: 0.070
  34. Cooperativity at a distance promoted by the combined action of two replication initiator proteins and a DNA bending protein at the replication origin of pSC101. Genes Dev. 1991 Aug; 5(8):1453-63.
    View in: PubMed
    Score: 0.070
  35. Replication terminator protein of Escherichia coli is a transcriptional repressor of its own synthesis. Proc Natl Acad Sci U S A. 1991 May 01; 88(9):3867-71.
    View in: PubMed
    Score: 0.069
  36. Escherichia coli replication terminator protein impedes simian virus 40 (SV40) DNA replication fork movement and SV40 large tumor antigen helicase activity in vitro at a prokaryotic terminus sequence. Proc Natl Acad Sci U S A. 1991 Apr 01; 88(7):2618-22.
    View in: PubMed
    Score: 0.069
  37. DNA-protein interaction at the replication termini of plasmid R6K. Genes Dev. 1991 Jan; 5(1):74-82.
    View in: PubMed
    Score: 0.067
  38. Sequence-specific and polarized replication termination in vitro: complementation of extracts of tus- Escherichia coli by purified Ter protein and analysis of termination intermediates. Proc Natl Acad Sci U S A. 1990 Apr; 87(7):2828-32.
    View in: PubMed
    Score: 0.064
  39. Investigations of pi initiator protein-mediated interaction between replication origins alpha and gamma of the plasmid R6K. J Biol Chem. 2010 Feb 19; 285(8):5695-704.
    View in: PubMed
    Score: 0.063
  40. Replication initiation at a distance: determination of the cis- and trans-acting elements of replication origin alpha of plasmid R6K. J Biol Chem. 2010 Feb 19; 285(8):5705-12.
    View in: PubMed
    Score: 0.063
  41. A host-encoded DNA-binding protein promotes termination of plasmid replication at a sequence-specific replication terminus. Proc Natl Acad Sci U S A. 1989 May; 86(9):3026-30.
    View in: PubMed
    Score: 0.060
  42. Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNA. Proc Natl Acad Sci U S A. 1988 Sep; 85(17):6287-91.
    View in: PubMed
    Score: 0.057
  43. Interaction of the bovine papillomavirus type 1 E2 transcriptional control protein with the viral enhancer: purification of the DNA-binding domain and analysis of its contact points with DNA. J Virol. 1988 Jun; 62(6):1925-31.
    View in: PubMed
    Score: 0.056
  44. DNA bending is induced in an enhancer by the DNA-binding domain of the bovine papillomavirus E2 protein. Proc Natl Acad Sci U S A. 1988 Mar; 85(6):1826-30.
    View in: PubMed
    Score: 0.055
  45. Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein. Cell. 1988 Feb 12; 52(3):375-83.
    View in: PubMed
    Score: 0.055
  46. The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101. Cell. 1987 Jun 05; 49(5):709-17.
    View in: PubMed
    Score: 0.053
  47. The E2 "gene" of bovine papillomavirus encodes an enhancer-binding protein. Proc Natl Acad Sci U S A. 1987 Mar; 84(5):1215-8.
    View in: PubMed
    Score: 0.052
  48. Crystal structure of pi initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication. Proc Natl Acad Sci U S A. 2006 Dec 05; 103(49):18481-6.
    View in: PubMed
    Score: 0.051
  49. The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2006 Jan 24; 103(4):897-902.
    View in: PubMed
    Score: 0.048
  50. Conformational changes in a replication origin induced by an initiator protein. Cell. 1985 Nov; 43(1):189-97.
    View in: PubMed
    Score: 0.047
  51. Replication initiator protein of plasmid R6K autoregulates its own synthesis at the transcriptional step. Proc Natl Acad Sci U S A. 1985 May; 82(9):2574-8.
    View in: PubMed
    Score: 0.045
  52. swi1- and swi3-dependent and independent replication fork arrest at the ribosomal DNA of Schizosaccharomyces pombe. Proc Natl Acad Sci U S A. 2004 Sep 28; 101(39):14085-90.
    View in: PubMed
    Score: 0.044
  53. Biochemical investigations of control of replication initiation of plasmid R6K. J Biol Chem. 2004 Feb 20; 279(8):6711-9.
    View in: PubMed
    Score: 0.041
  54. Reconstitution of R6K DNA replication in vitro using 22 purified proteins. J Biol Chem. 2003 Nov 14; 278(46):45476-84.
    View in: PubMed
    Score: 0.041
  55. Primary structure of the replication initiation protein of plasmid R6K. Proc Natl Acad Sci U S A. 1982 Sep; 79(18):5475-9.
    View in: PubMed
    Score: 0.038
  56. A replication terminus located at or near a replication checkpoint of Bacillus subtilis functions independently of stringent control. J Biol Chem. 2001 Mar 23; 276(12):8771-7.
    View in: PubMed
    Score: 0.034
  57. Termination of DNA replication of bacterial and plasmid chromosomes. Mol Microbiol. 1999 Mar; 31(6):1611-8.
    View in: PubMed
    Score: 0.030
  58. Mechanistic studies of initiator-initiator interaction and replication initiation. EMBO J. 1998 Sep 01; 17(17):5192-200.
    View in: PubMed
    Score: 0.029
  59. Termination of DNA replication in prokaryotic chromosomes. Genet Eng (N Y). 1997; 19:101-19.
    View in: PubMed
    Score: 0.026
  60. Crystal structure of the replication terminator protein from B. subtilis at 2.6 A. Cell. 1995 Feb 24; 80(4):651-60.
    View in: PubMed
    Score: 0.022
  61. Crystallization and preliminary structural analysis of the replication terminator protein of Bacillus subtilis. J Biol Chem. 1992 Sep 15; 267(26):18885-9.
    View in: PubMed
    Score: 0.019
  62. Structural and functional analysis of a replication enhancer: separation of the enhancer activity from origin function by mutational dissection of the replication origin gamma of plasmid R6K. Proc Natl Acad Sci U S A. 1992 Jun 01; 89(11):5078-82.
    View in: PubMed
    Score: 0.019
  63. Activation in vivo of the minimal replication origin beta of plasmid R6K requires a small target sequence essential for DNA looping. New Biol. 1992 May; 4(5):569-80.
    View in: PubMed
    Score: 0.018
  64. The DNA-binding domain of HPV-16 E2 protein interaction with the viral enhancer: protein-induced DNA bending and role of the nonconserved core sequence in binding site affinity. Virology. 1990 Feb; 174(2):557-75.
    View in: PubMed
    Score: 0.016
  65. DnaA protein is required for replication of the minimal replicon of the broad-host-range plasmid RK2 in Escherichia coli. J Bacteriol. 1987 Oct; 169(10):4703-9.
    View in: PubMed
    Score: 0.013
  66. Rapid purification of a cloned gene product by genetic fusion and site-specific proteolysis. Proc Natl Acad Sci U S A. 1984 Aug; 81(15):4692-6.
    View in: PubMed
    Score: 0.011
  67. The replication initiator protein of plasmid R6K tagged with beta-galactosidase shows sequence-specific DNA-binding. Cell. 1983 Jan; 32(1):131-40.
    View in: PubMed
    Score: 0.010
  68. The nucleotide sequence surrounding the replication terminus of R6K. Proc Natl Acad Sci U S A. 1981 Apr; 78(4):2095-9.
    View in: PubMed
    Score: 0.009
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