Emil Alexov to Hydrogen-Ion Concentration
This is a "connection" page, showing publications Emil Alexov has written about Hydrogen-Ion Concentration.
Connection Strength
2.305
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In silico modeling of pH-optimum of protein-protein binding. Proteins. 2011 Mar; 79(3):925-36.
Score: 0.315
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On the pH-optimum of activity and stability of proteins. Proteins. 2010 Sep; 78(12):2699-706.
Score: 0.308
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Numerical calculations of the pH of maximal protein stability. The effect of the sequence composition and three-dimensional structure. Eur J Biochem. 2004 Jan; 271(1):173-85.
Score: 0.194
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Computational Investigation of the pH Dependence of Stability of Melanosome Proteins: Implication for Melanosome formation and Disease. Int J Mol Sci. 2021 Jul 31; 22(15).
Score: 0.164
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PKAD: a database of experimentally measured pKa values of ionizable groups in proteins. Database (Oxford). 2019 01 01; 2019.
Score: 0.137
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DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate. Proteins. 2018 12; 86(12):1277-1283.
Score: 0.136
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Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties. Biophys J. 1997 May; 72(5):2075-93.
Score: 0.122
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A New DelPhi Feature for Modeling Electrostatic Potential around Proteins: Role of Bound Ions and Implications for Zeta-Potential. Langmuir. 2017 03 07; 33(9):2283-2295.
Score: 0.121
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Computational investigation of proton transfer, pKa shifts and pH-optimum of protein-DNA and protein-RNA complexes. Proteins. 2017 Feb; 85(2):282-295.
Score: 0.120
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Protonation and pK changes in protein-ligand binding. Q Rev Biophys. 2013 May; 46(2):181-209.
Score: 0.093
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Progress in the prediction of pKa values in proteins. Proteins. 2011 Dec; 79(12):3260-75.
Score: 0.083
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Developing hybrid approaches to predict pKa values of ionizable groups. Proteins. 2011 Dec; 79(12):3389-99.
Score: 0.082
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On the role of electrostatics in protein-protein interactions. Phys Biol. 2011 Jun; 8(3):035001.
Score: 0.081
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Optimization of electrostatic interactions in protein-protein complexes. Biophys J. 2007 Nov 15; 93(10):3340-52.
Score: 0.062
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Assessing the quality of the homology-modeled 3D structures from electrostatic standpoint: test on bacterial nucleoside monophosphate kinase families. J Bioinform Comput Biol. 2007 Jun; 5(3):693-715.
Score: 0.061
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Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein-inhibitor association: application to plasmepsin, cathepsin D and endothiapepsin-pepstatin complexes. Proteins. 2004 Aug 15; 56(3):572-84.
Score: 0.051
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Experimental and numerical study of the poplar plastocyanin isoforms using Tyr as a probe for electrostatic similarity and dissimilarity. Biochim Biophys Acta. 2004 Apr 08; 1698(1):67-75.
Score: 0.049
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A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins. Biochim Biophys Acta. 2000 May 12; 1458(1):63-87.
Score: 0.038
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Calculated protein and proton motions coupled to electron transfer: electron transfer from QA- to QB in bacterial photosynthetic reaction centers. Biochemistry. 1999 Jun 29; 38(26):8253-70.
Score: 0.035
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Analysis of electrostatic interactions in ribonuclease A monoclinic crystal. Biochim Biophys Acta. 1994 May 18; 1206(1):55-62.
Score: 0.025
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Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides. J Mol Biol. 2007 Mar 09; 366(5):1475-96.
Score: 0.015
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Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain. J Mol Biol. 2006 Feb 03; 355(5):1078-94.
Score: 0.014