Emil Alexov to Algorithms
This is a "connection" page, showing publications Emil Alexov has written about Algorithms.
Connection Strength
2.635
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Statistical investigation of surface bound ions and further development of BION server to include pH and salt dependence. J Comput Chem. 2015 Dec 15; 36(32):2381-93.
Score: 0.337
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Modeling the electrostatic potential of asymmetric lipopolysaccharide membranes: the MEMPOT algorithm implemented in DelPhi. J Comput Chem. 2014 Jul 15; 35(19):1418-1429.
Score: 0.304
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Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. Int J Biol Macromol. 2008 Aug 15; 43(2):198-208.
Score: 0.201
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Protein-protein interactions. Curr Pharm Biotechnol. 2008 Apr; 9(2):55-6.
Score: 0.200
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SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinity. Bioinformatics. 2021 05 17; 37(7):992-999.
Score: 0.124
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On regularization of charge singularities in solving the Poisson-Boltzmann equation with a smooth solute-solvent boundary. Math Biosci Eng. 2021 01 21; 18(2):1370-1405.
Score: 0.121
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BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics. Int J Mol Sci. 2020 Dec 29; 22(1).
Score: 0.121
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An Ensemble Approach to Predict the Pathogenicity of Synonymous Variants. Genes (Basel). 2020 09 21; 11(9).
Score: 0.118
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A Newton-like iterative method implemented in the DelPhi for solving the nonlinear Poisson-Boltzmann equation. Math Biosci Eng. 2020 09 21; 17(6):6259-6277.
Score: 0.118
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SAAMBE-3D: Predicting Effect of Mutations on Protein-Protein Interactions. Int J Mol Sci. 2020 Apr 07; 21(7).
Score: 0.115
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DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding. J Comput Chem. 2017 04 05; 38(9):584-593.
Score: 0.092
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ProBLM web server: protein and membrane placement and orientation package. Comput Math Methods Med. 2014; 2014:838259.
Score: 0.077
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Continuous development of schemes for parallel computing of the electrostatics in biological systems: implementation in DelPhi. J Comput Chem. 2013 Aug 15; 34(22):1949-60.
Score: 0.071
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BION web server: predicting non-specifically bound surface ions. Bioinformatics. 2013 Mar 15; 29(6):805-6.
Score: 0.070
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Predicting nonspecific ion binding using DelPhi. Biophys J. 2012 Jun 20; 102(12):2885-93.
Score: 0.067
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Highly efficient and exact method for parallelization of grid-based algorithms and its implementation in DelPhi. J Comput Chem. 2012 Sep 15; 33(24):1960-6.
Score: 0.067
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DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol. Bioinformatics. 2012 Jun 15; 28(12):1655-7.
Score: 0.066
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Analyzing effects of naturally occurring missense mutations. Comput Math Methods Med. 2012; 2012:805827.
Score: 0.066
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On the pH-optimum of activity and stability of proteins. Proteins. 2010 Sep; 78(12):2699-706.
Score: 0.059
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Modeling effects of human single nucleotide polymorphisms on protein-protein interactions. Biophys J. 2009 Mar 18; 96(6):2178-88.
Score: 0.053
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Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions. Curr Pharm Biotechnol. 2008 Apr; 9(2):123-33.
Score: 0.050
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Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives. BMC Bioinformatics. 2006 Nov 16; 7:503.
Score: 0.045
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Predicting 3D structures of transient protein-protein complexes by homology. Biochim Biophys Acta. 2006 Sep; 1764(9):1498-511.
Score: 0.045
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A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states. J Math Biol. 2019 07; 79(2):631-672.
Score: 0.027
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Protein structure analysis online. Curr Protoc Protein Sci. 2007 Nov; Chapter 2:Unit 2.13.
Score: 0.012
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Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling. Proteins. 2003; 53 Suppl 6:430-5.
Score: 0.009