Emil Alexov to Static Electricity
This is a "connection" page, showing publications Emil Alexov has written about Static Electricity.
Connection Strength
7.420
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BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics. Int J Mol Sci. 2020 Dec 29; 22(1).
Score: 0.706
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Capturing the Effects of Explicit Waters in Implicit Electrostatics Modeling: Qualitative Justification of Gaussian-Based Dielectric Models in DelPhi. J Chem Inf Model. 2020 04 27; 60(4):2229-2246.
Score: 0.669
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Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations. Sci Rep. 2017 08 15; 7(1):8237.
Score: 0.558
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DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding. J Comput Chem. 2017 04 05; 38(9):584-593.
Score: 0.538
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Modeling the electrostatic potential of asymmetric lipopolysaccharide membranes: the MEMPOT algorithm implemented in DelPhi. J Comput Chem. 2014 Jul 15; 35(19):1418-1429.
Score: 0.445
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Developing hybrid approaches to predict pKa values of ionizable groups. Proteins. 2011 Dec; 79(12):3389-99.
Score: 0.366
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Electrostatic control of the overall shape of calmodulin: numerical calculations. Eur Biophys J. 2007 Mar; 36(3):225-37.
Score: 0.269
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Electrostatic properties of protein-protein complexes. Biophys J. 2006 Sep 01; 91(5):1724-36.
Score: 0.258
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DelPhi Suite: New Developments and Review of Functionalities. J Comput Chem. 2019 10 30; 40(28):2502-2508.
Score: 0.159
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A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states. J Math Biol. 2019 07; 79(2):631-672.
Score: 0.157
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DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate. Proteins. 2018 12; 86(12):1277-1283.
Score: 0.152
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E-hooks provide guidance and a soft landing for the microtubule binding domain of dynein. Sci Rep. 2018 09 05; 8(1):13266.
Score: 0.150
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A New DelPhi Feature for Modeling Electrostatic Potential around Proteins: Role of Bound Ions and Implications for Zeta-Potential. Langmuir. 2017 03 07; 33(9):2283-2295.
Score: 0.135
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Computational investigation of proton transfer, pKa shifts and pH-optimum of protein-DNA and protein-RNA complexes. Proteins. 2017 Feb; 85(2):282-295.
Score: 0.134
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Cofactors-loaded quaternary structure of lysine-specific demethylase 5C (KDM5C) protein: Computational model. Proteins. 2016 12; 84(12):1797-1809.
Score: 0.131
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Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions. Sci Rep. 2016 08 17; 6:31523.
Score: 0.130
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Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules. Sci Rep. 2016 Mar 18; 6:23249.
Score: 0.127
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DelPhiPKa web server: predicting pKa of proteins, RNAs and DNAs. Bioinformatics. 2016 Feb 15; 32(4):614-5.
Score: 0.123
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Statistical investigation of surface bound ions and further development of BION server to include pH and salt dependence. J Comput Chem. 2015 Dec 15; 36(32):2381-93.
Score: 0.123
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pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa. Proteins. 2015 Dec; 83(12):2186-97.
Score: 0.123
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Structural, Dynamical, and Energetical Consequences of Rett Syndrome Mutation R133C in MeCP2. Comput Math Methods Med. 2015; 2015:746157.
Score: 0.119
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Continuous development of schemes for parallel computing of the electrostatics in biological systems: implementation in DelPhi. J Comput Chem. 2013 Aug 15; 34(22):1949-60.
Score: 0.104
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Enhancing human spermine synthase activity by engineered mutations. PLoS Comput Biol. 2013; 9(2):e1002924.
Score: 0.102
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BION web server: predicting non-specifically bound surface ions. Bioinformatics. 2013 Mar 15; 29(6):805-6.
Score: 0.102
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Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling. BMC Struct Biol. 2012 Dec 05; 12:31.
Score: 0.101
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Predicting nonspecific ion binding using DelPhi. Biophys J. 2012 Jun 20; 102(12):2885-93.
Score: 0.098
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Highly efficient and exact method for parallelization of grid-based algorithms and its implementation in DelPhi. J Comput Chem. 2012 Sep 15; 33(24):1960-6.
Score: 0.097
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DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol. Bioinformatics. 2012 Jun 15; 28(12):1655-7.
Score: 0.097
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Progress in the prediction of pKa values in proteins. Proteins. 2011 Dec; 79(12):3260-75.
Score: 0.093
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On the role of electrostatics in protein-protein interactions. Phys Biol. 2011 Jun; 8(3):035001.
Score: 0.090
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Modeling effects of human single nucleotide polymorphisms on protein-protein interactions. Biophys J. 2009 Mar 18; 96(6):2178-88.
Score: 0.078
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Optimization of electrostatic interactions in protein-protein complexes. Biophys J. 2007 Nov 15; 93(10):3340-52.
Score: 0.070
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Assessing the quality of the homology-modeled 3D structures from electrostatic standpoint: test on bacterial nucleoside monophosphate kinase families. J Bioinform Comput Biol. 2007 Jun; 5(3):693-715.
Score: 0.069
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BANMOKI: a searchable database of homology-based 3D models and their electrostatic properties of five bacterial nucleoside monophosphate kinase families. Int J Biol Macromol. 2007 Jun 01; 41(1):114-9.
Score: 0.067
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Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies. Biophys J. 2007 Mar 15; 92(6):1891-9.
Score: 0.067
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Comparative study of the stability of poplar plastocyanin isoforms. Biochim Biophys Acta. 2005 Apr 15; 1748(1):116-27.
Score: 0.058
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Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein-inhibitor association: application to plasmepsin, cathepsin D and endothiapepsin-pepstatin complexes. Proteins. 2004 Aug 15; 56(3):572-84.
Score: 0.057
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Experimental and numerical study of the poplar plastocyanin isoforms using Tyr as a probe for electrostatic similarity and dissimilarity. Biochim Biophys Acta. 2004 Apr 08; 1698(1):67-75.
Score: 0.055
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Role of the protein side-chain fluctuations on the strength of pair-wise electrostatic interactions: comparing experimental with computed pK(a)s. Proteins. 2003 Jan 01; 50(1):94-103.
Score: 0.051
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Electrostatics in Computational Biophysics and Its Implications for Disease Effects. Int J Mol Sci. 2022 Sep 07; 23(18).
Score: 0.050
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On regularization of charge singularities in solving the Poisson-Boltzmann equation with a smooth solute-solvent boundary. Math Biosci Eng. 2021 01 21; 18(2):1370-1405.
Score: 0.044
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A Newton-like iterative method implemented in the DelPhi for solving the nonlinear Poisson-Boltzmann equation. Math Biosci Eng. 2020 09 21; 17(6):6259-6277.
Score: 0.043
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Modeling the effects of mutations on the free energy of the first electron transfer from QA- to QB in photosynthetic reaction centers. Biochemistry. 2000 May 23; 39(20):5940-52.
Score: 0.042
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A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins. Biochim Biophys Acta. 2000 May 12; 1458(1):63-87.
Score: 0.042
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Calculated protein and proton motions coupled to electron transfer: electron transfer from QA- to QB in bacterial photosynthetic reaction centers. Biochemistry. 1999 Jun 29; 38(26):8253-70.
Score: 0.040
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Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties. Biophys J. 1997 May; 72(5):2075-93.
Score: 0.034
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Cytoskeletal-like Filaments of Ca2+-Calmodulin-Dependent Protein Kinase II Are Formed in a Regulated and Zn2+-Dependent Manner. Biochemistry. 2017 04 18; 56(15):2149-2160.
Score: 0.034
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Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity. Bioinformatics. 2014 Aug 15; 30(16):2302-9.
Score: 0.028
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Protein structure analysis online. Curr Protoc Protein Sci. 2007 Nov; Chapter 2:Unit 2.13.
Score: 0.018
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Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides. J Mol Biol. 2007 Mar 09; 366(5):1475-96.
Score: 0.017