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Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.
Visualization and statistical comparisons of microbial communities using R packages on Phylochip data.
Simrank: Rapid and sensitive general-purpose k-mer search tool.
Causal graph-based analysis of genome-wide association data in rheumatoid arthritis.
PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances.
A general framework for association analysis of microbial communities on a taxonomic tree.
Multivariate Welch t-test on distances.
W*d -test: robust distance-based multivariate analysis of variance
Trends and developments in bioinformatics in 2010: prospects and perspectives.
MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure-Mediator-Response Relationships.
Translational Center of Molecular Profiling in Preclinical and Established Lupus (COMPEL)
The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community.
A phylogenetic approach for weighting genetic sequences.