Emil Alexov to Protein Conformation
This is a "connection" page, showing publications Emil Alexov has written about Protein Conformation.
Connection Strength
3.516
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DelPhiForce web server: electrostatic forces and energy calculations and visualization. Bioinformatics. 2017 Nov 15; 33(22):3661-3663.
Score: 0.544
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Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. Int J Biol Macromol. 2008 Aug 15; 43(2):198-208.
Score: 0.282
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BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics. Int J Mol Sci. 2020 Dec 29; 22(1).
Score: 0.169
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Novel Genetic Markers for Early Detection of Elevated Breast Cancer Risk in Women. Int J Mol Sci. 2019 Sep 28; 20(19).
Score: 0.155
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DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate. Proteins. 2018 12; 86(12):1277-1283.
Score: 0.145
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Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations. Sci Rep. 2017 08 15; 7(1):8237.
Score: 0.134
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Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties. Biophys J. 1997 May; 72(5):2075-93.
Score: 0.131
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Investigating the linkage between disease-causing amino acid variants and their effect on protein stability and binding. Proteins. 2016 Feb; 84(2):232-9.
Score: 0.120
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Mutations in the KDM5C ARID Domain and Their Plausible Association with Syndromic Claes-Jensen-Type Disease. Int J Mol Sci. 2015 Nov 13; 16(11):27270-87.
Score: 0.118
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pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa. Proteins. 2015 Dec; 83(12):2186-97.
Score: 0.118
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On human disease-causing amino acid variants: statistical study of sequence and structural patterns. Hum Mutat. 2015 May; 36(5):524-534.
Score: 0.113
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Structural, Dynamical, and Energetical Consequences of Rett Syndrome Mutation R133C in MeCP2. Comput Math Methods Med. 2015; 2015:746157.
Score: 0.113
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Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins. Curr Opin Struct Biol. 2015 Jun; 32:18-24.
Score: 0.112
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Chronic Beryllium Disease: revealing the role of beryllium ion and small peptides binding to HLA-DP2. PLoS One. 2014; 9(11):e111604.
Score: 0.110
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Enhancing human spermine synthase activity by engineered mutations. PLoS Comput Biol. 2013; 9(2):e1002924.
Score: 0.098
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Progress in the prediction of pKa values in proteins. Proteins. 2011 Dec; 79(12):3260-75.
Score: 0.089
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Developing hybrid approaches to predict pKa values of ionizable groups. Proteins. 2011 Dec; 79(12):3389-99.
Score: 0.087
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Modeling effects of human single nucleotide polymorphisms on protein-protein interactions. Biophys J. 2009 Mar 18; 96(6):2178-88.
Score: 0.075
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Protein-protein interactions. Curr Pharm Biotechnol. 2008 Apr; 9(2):55-6.
Score: 0.070
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Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions. Curr Pharm Biotechnol. 2008 Apr; 9(2):123-33.
Score: 0.070
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Protein structure analysis online. Curr Protoc Protein Sci. 2007 Nov; Chapter 2:Unit 2.13.
Score: 0.068
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Optimization of electrostatic interactions in protein-protein complexes. Biophys J. 2007 Nov 15; 93(10):3340-52.
Score: 0.067
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Predicting interacting and interfacial residues using continuous sequence segments. Int J Biol Macromol. 2007 Dec 01; 41(5):615-23.
Score: 0.067
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Assessing the quality of the homology-modeled 3D structures from electrostatic standpoint: test on bacterial nucleoside monophosphate kinase families. J Bioinform Comput Biol. 2007 Jun; 5(3):693-715.
Score: 0.066
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Electrostatic control of the overall shape of calmodulin: numerical calculations. Eur Biophys J. 2007 Mar; 36(3):225-37.
Score: 0.064
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Comparative study of the stability of poplar plastocyanin isoforms. Biochim Biophys Acta. 2005 Apr 15; 1748(1):116-27.
Score: 0.056
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Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein-inhibitor association: application to plasmepsin, cathepsin D and endothiapepsin-pepstatin complexes. Proteins. 2004 Aug 15; 56(3):572-84.
Score: 0.054
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Numerical calculations of the pH of maximal protein stability. The effect of the sequence composition and three-dimensional structure. Eur J Biochem. 2004 Jan; 271(1):173-85.
Score: 0.052
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A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins. Biochim Biophys Acta. 2000 May 12; 1458(1):63-87.
Score: 0.040
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Calculated protein and proton motions coupled to electron transfer: electron transfer from QA- to QB in bacterial photosynthetic reaction centers. Biochemistry. 1999 Jun 29; 38(26):8253-70.
Score: 0.038
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Three additional patients with EED-associated overgrowth: potential mutation hotspots identified? J Hum Genet. 2019 Jun; 64(6):561-572.
Score: 0.037
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Rational design of small-molecule stabilizers of spermine synthase dimer by virtual screening and free energy-based approach. PLoS One. 2014; 9(10):e110884.
Score: 0.027
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Comparative study of generalized born models: Born radii and peptide folding. J Phys Chem B. 2005 Feb 24; 109(7):3008-22.
Score: 0.014
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On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profiles. J Mol Biol. 2003 Dec 12; 334(5):1043-62.
Score: 0.013